Jim McCusker's Publications

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James McCusker
Contact Info
Emailmccusj@rpi.edu
Additional Info

Presentations
Publications

McCusker, J., Rashid, S.M., Liang, J., Liu, Y., Chastain, K., Pinheiro, P., Stingone, J.A., and McGuinness, D.L. 2017. Broad, Interdisciplinary Science In Tela: An Exposure and Child Health Ontology. In Proceedings of 9th International ACM Web Science Conference 2017 (June 26-28 2017, Troy, NY, USA).
McCusker, J., Dumontier, M., Yan, R., He, S., Dordick, J., and McGuinness, D.L. 2017. Finding melanoma drugs through a probabilistic knowledge graph. PeerJ Computer Science
McCusker, J. 2015. WebSig: A Digital Signature Framework for the Web.
McCusker, J., Yan, R., Solanki, K., Erickson, J.S., Chang, C., Dumontier, M., Dordick, J., and McGuinness, D.L. 2014. A Nanopublication Framework for Biological Networks using Cytoscape.js. In Proceedings of International Conference on Biomedical Ontologies (ICBO 2014) (October 6-9 2014, Houston, TX).
Erickson, J.S., Chastain, K., McCusker, J., Fry, Z., Yan, R., and McGuinness, D.L. 2014. Technical Report: Identifying First Responder Communities through Social Network Analysis of Disaster-Related Traffic.
McCusker, J., Solanki, K., Chang, C., Dumontier, M., Dordick, J., and McGuinness, D.L. 2014. A Nanopublication Framework for Systems Biology and Drug Repurposing. In Proceedings of CSHALS 2014 (February 26-28 2014, Boston, MA).
McCusker, J., Lebo, T., Krauthammer, M.O., and McGuinness, D.L. 2013. Next Generation Cancer Data Discovery, Access, and Integration Using Prizms and Nanopublications. In Proceedings of Ninth International Conference on Data Integration in the Life Sciences (July 11-12 2013, Montreal, Quebec).
Erickson, J.S., McCusker, J., McGuinness, D.L., Fry, Z., Chastain, K., and Yan, R. 2013. Technical Report: Requirements Gathering through First Responder Social Network Analysis.
Seyed, P., Lebo, T., Patton, E.W., McCusker, J., and McGuinness, D.L. 2013. SemantEco: A Next- Generation Web Observatory.
McCusker, J., McGuinness, D.L., Lee, J., Thomas, C., Courtney, P., Tatalovich, Z., Contractor, N., Morgan, G.D., and Shaikh, A.R. 2013. Towards Next Generation Health Data Exploration: A Data Cube-based Investigation into Population Statistics for Tobacco. In Proceedings of Hawaii International Conference on System Sciences 2013 (January 7-10 2013, Grand Wailea, Maui, Hawaii).
Michaelis, J., McGuinness, D.L., Chang, C., Luciano, J.S., McCusker, J., and Hendler, J. 2012. Applying Multidimensional Navigation and Explanation in Semantic Dataset Summarization. In Proceedings of ISWC 2012 (November 11-15 2012, Boston, MA).
McCusker, J., Lee, J., Thomas, C., and McGuinness, D.L. 2012. Public Health Surveillance Using Global Health Explorer. In Proceedings of SATBI+SWIM at ISWC 2012 (November 12 2012, Boston, MA).
McCusker, J., Lebo, T., Graves, A., DiFranzo, D., Pinheiro, P., and McGuinness, D.L. 2012. Functional Requirements for Information Resource Provenance on the Web. In Proceedings of International Provenance and Annotation Workshop 2012 (June 18-22 2012, Santa Barbara, California).
McCusker, J., Lebo, T., Chang, C., Pinheiro, P., and McGuinness, D.L. 2012. Parallel Identities for Managing Open Government Data. IEEE Intelligent Systems
McGuinness, D.L., Shaikh, A.R., Lebo, T., Ding, L., Courtney, P., McCusker, J., Moser, R., Morgan, G.D., Tatalovich, Z., Willis, G., Contractor, N., and Hesse, B.W. 2012. Towards Semantically-Enabled Next Generation Community Health Information Portals: The PopSciGrid Pilot. In Proceedings of Hawaii International Conference on System Sciences 2012 (January 4-7 2012, Grand Wailea, Maui).
McCusker, J., Lebo, T., Ding, L., Chang, C., Pinheiro, P., and McGuinness, D.L. 2011. Where did you hear that? Information and the Sources They Come From. In Proceedings of International Workshop on Linked Science 2011 (October 14 2011, Bonn, Germany).
McGuinness, D.L., Shaikh, A.R., Moser, R., Hesse, B.W., Morgan, G.D., Jacobs, M., Hunt, Y., Tatalovich, Z., Willis, G., Blake, K., Courtney, P., Finney, L., Sanders, A., Ding, L., Lebo, T., McCusker, J., Contractor, N., Huang, Y., and Devlin, H. 2011. A Semantically-enabled Community Health Portal for Cancer Prevention and Control. In Proceedings of Web Science Conference 2011 (June 15-17 2011, Koblenz, Germany).
Ding, L., Michaelis, J., McCusker, J., and McGuinness, D.L. 2011. Linked provenance data: A semantic Web-based approach to interoperable workflow traces. Future Generation Computer Systems, pages 797–805.
McCusker, J., Luciano, J.S., and McGuinness, D.L. 2011. Towards an Ontology for Conceptual Modeling. In Proceedings of International Conference on Biomedical Ontology (July 26-30 2011, Buffalo, NY, US).
Halpin, H., Hayes, P.J., McCusker, J., McGuinness, D.L., and Thompson, H.S. 2010. When owl:sameAs isn’t the Same: An Analysis of Identity in Linked Data. In Proceedings of ISWC 2010 (November 7-11 2010, Shanghai, China).
McCusker, J. and McGuinness, D.L. 2010. Provenance of High Throughput Biomedical Experiments. In Proceedings of International Provenance and Annotation Workshop 2010 (June 15-16 2010, Hefner Alumni House, Rensselaer Polytechnic Institute, Troy, NY, US).
McCusker, J. and McGuinness, D.L. 2010. Towards Identity in Linked Data. In Proceedings of OWLED 2010 (June 21-22 2010).

  • James McCusker, Joshua A Phillips, Alejandra González Beltrán, Anthony Finkelstein, and Michael Krauthammer. “Semantic web data warehousing for caGrid.” BMC Bioinformatics 10, no. Suppl 10 (2009): S2. http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2755823&tool=pmcentrez&rendertype=abstract.
  • Holford, Matthew E, James McCusker, Kei-Hoi Cheung, and Michael Krauthammer. “Analysis of Cancer Omics Data In A Semantic Web Framework.” In Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences BerlinGermany December 810 2010, 1-15, 2010.
  • Halaban, Ruth, Wengeng Zhang, Antonella Bacchiocchi, Elaine Cheng, Fabio Parisi, Stephan Ariyan, Michael Krauthammer, James McCusker, Yuval Kluger, and Mario Sznol. “PLX4032, a selective BRAFV600E kinase inhibitor, activates the ERK pathway and enhances cell migration and proliferation of BRAFWT melanoma cells.” Pigment cell melanoma research 23, no. 2 (2010): 190-200. http://www.ncbi.nlm.nih.gov/pubmed/20149136.
  • Xu, Songhua, James McCusker, and Michael Krauthammer. “Yale Image Finder (YIF): a new search engine for retrieving biomedical images.” Bioinformatics 24, no. 17 (2008): 1968-1970. http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citation&list_uids=18614584.
  • S. Szpakowski, James McCusker, and M. Krauthammer, “Using Semantic Web Technologies to Annotate and Align Microarray Designs,” Cancer Informatics, vol. 8, 2009.