Instructors: Professor Deborah McGuinness with lectures from Professor Joanne Luciano, Professor Peter Fox, and grad student Jim McCusker.
TA: Weijing Chen - chenw8@rpi.edu Office Hours:Wednesday afternoons 5:00 pm - 8:00 pm in Winslow 2128
suggested auxiliary meetings: Tetherless Education Wednesday Evenings (TWed): http://tw.rpi.edu/web/TWed
Meeting times: Monday afternoons 1:00 pm - 3:50; Winslow 1140
NOTICE - IRENE changed the first class to August 31 at 5:15pm!
Office Hours: By appointment and walk-in in Winslow 2104 (Professor McGuinness) and Winslow 2143 (Professor Luciano)
phone: 276-4404 (Professor McGuinness) and 276-4939 (Professor Luciano)
Class Listing: SEMANTIC E-SCIENCE CLASS WILL MEET IN WINSLOW BUILDING from 1:00 pm - 3:50 pm - except for the first class due to Hurricane Irene which is being rescheduled to August 31 at 5:15pm.
- CSCI 6962 - 01, 86933
- CSCI 4969 - 01, 87927
- ITWS 6960 - 01, 87198
- ITWS 4969 - 01, 87928
Table of Contents
- Description
- Course Goals
- Topics
- Projects
- Course Calendar
- Course Syllabus
- Course Learning Objective
- Assessment Criteria
- Suggested Prerequisites
- Reference List
- Attendance Policy
Description
Science has fully entered a new mode of operation. E-science, defined as a combination of science, informatics, computer science, cyberinfrastructure and information technology is changing the way all of these disciplines do both their individual and collaborative work.
Scientists are facing global problems of a magnitude, complexity and interdisciplinary nature that progress is limited by a trained and agile workforce.
At present, there is a lack formal training in the key cognitive and skill areas that would enable graduates to become key participants in e-science collaborations. The purpose is to teach methodologies, and provide application experience and skill-sets in an inter-disciplinary forum to students and interested participants.
As semantic technologies have been gaining momentum in various e-Science areas (for example, W3C's new interest group for semantic web health care and life science), it is important to offer semantic-based methodologies, tools, middleware to facilitate scientific knowledge modeling, logical-based hypothesis checking, semantic data integration and application composition, integrated knowledge discovery and data analyzing for different e-Science applications.
Partially influenced by the Artificial Intelligence community, the Semantic Web researchers have largely focused on formal aspects of semantic representation languages or general-purpose semantic application development, with inadequate consideration of requirements from specific science areas. On the other hand, general science researchers are growing ever more dependent on the web, but they have no coherent agenda for exploring the emerging trends on the semantic web technologies. It urgently requires the development of a multi-disciplinary field to foster the growth and development of e-Science applications based on the semantic technologies and related knowledge-based approaches.
Goals
Goals: to fill the gaps that are currently present in the integrative nature of informatics for the translation of science into requirements for the underlying and largely syntactic e-infrastructure.
Topics
Topics for Semantic e-Science/ Foundations:
- Semantic Methodologies
- Knowledge Representation for e-Science
- Ontology Engineering and Re-Use for e-Science
- Knowledge Integration for e-Science
- Semantic Data Integration
- Semantic Web Languages, Tools and Services
- Semantic Infrastructure and Architecture for e-Science
- Semantic Grid Middleware
- Ontology Evolution for e-Science
- Knowledge Management for e-Science
- e-Science Workflow Management
- Data life-cycle for e-Science
- Data Mining and Knowledge Discovery
Semantic Web Applications and Ontologies for:
- Semantic Web for Health Care and Life Science
- Semantic Web for Bio-Med-informatics
- Semantic Web for System and Integrated Biology
- Semantic Web for Sun, Earth, Environment and Climate
- Semantic Web for Chemistry, Physics and Astronomy
- Semantic Web for Engineering
- Semantic Web and Digital Libraries and Scientific Publications
Semantic e-Science Project options
- Configuration and Deployment of Semantic Virtual Observatories
- Oceanography, astronomy, geology
- Ontology Merging and Validation Test-bed
- Semantic Language and Tool Use and Evaluation
- Semantic eScience Implementation Evaluation
- Semantic Collaboration Case Studies
- Semantic Application Development and Demonstration
Course Calendar
- Class 1: Monday, August 29 UPDATED due to Hurricane Irene to Wednesday August 31 at 5:15
- NO CLASS on Labor Day September 5
- Class 2: Monday, September 12
- Class 3: Monday, September 19
- Class 4: Monday, September 26
- Class 5: Monday, October 3
- Class 6: TUESDAY, October 11
- Class 7: Monday, October 17
- Class 8: Monday, October 24
- Class 9: Monday, October 31
- Class 10: Monday November 7
- Class 11: Monday, November 14
- Class 12: Monday November 21
- Class 13: Monday November 28
- Class 14: Monday December 5
Course Syllabus
For complete reading citation with link(s) to papers, see reference list below.
NOTICE: Part of readings may be inaccessible when downloaded off the campus. You could download them in the campus if you have the problem.
- Class 1: Introduction to e-Science and Semantic Web August 31, 2011
- Class 1 - Semantic eScience 2011 Lecture 1 [Download]
-
- readings: Ontologies 101, Semantic Web, e-Science, RDFS, OWL Guide.
- assignments and powerpoints are in process of being updated from the 2010 version
- Assignment 0 - Semantic eScience 2011 Assignment 0 [Download]
Summary - Turn in a ONE PAGE description of the reading you liked best, two main points, and why you thought the points were interesting and useful.
Class Notes: Semantic eScience 2011 Class Notes for August 31st [Download]
- Class 2 - Semantic eScience 2011 Lecture 2 [Download]
Foundations I: Methodologies, Knowledge Representation
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- reading: Semantic Web for the Working Ontologist (first few chapters). Alternate reading - OWL Pizza Tutorial.
- Assignment 1 - Semantic eScience 2011 Assignment 1 - Representing Knowledge and Understanding Representations - Understanding and Extending an Ontology [Download]
Summary - Review and ontology, make some simple extensions, and answer a few questions using those extensions.
Class Notes:Semantic eScience 2011 Class Notes for September 12th [Download] - Link to last year's assignment 1 Understanding and Extending the Virtual Solar Terrestrial Observatory Ontology
This week's class will be taught by Jim McCusker - mccusj@rpi.edu
- Class 3: Foundations II: Ontology Engineering [Download] September 19, 2011
-
http://tw.rpi.edu/media/latest/UseCase-Template_SeS
SemantAqua - Semantic Water Quality Portal example: http://tw.rpi.edu/web/project/SemantAQUA/UseCases
- reading: Use Cases
- Use Case Template - Semantic eScience Use Case Template 2011 [Download]
- Video Lecture Part 1, Part 2
Class Notes:Semantic eScience 2011 Class Notes for September 19th [Download]
This week's class is taught by Professor Peter Fox pfox@cs.rpi.edu
- Class 4: Class exercise I: Use Case development [Download], September 26, 2011
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- reading: Ontology Tool Summary, Pellet, OWL-S, SAWSDL, Wine Agent
-
- Assignment 2 - Semantic eScience 2011 Assignment 2 - Use-case Driven Knowledge Enoding [Download]
Summary - Document a semantic eScience use case and prepare a presentation.
Class Notes:Semantic eScience 2011 Class Notes for September 26th [Download]
- Assignment 2 - Semantic eScience 2011 Assignment 2 - Use-case Driven Knowledge Enoding [Download]
- Class 5: Foundations III: Semantic eScience 2011 Lecture 5 [Download] Languages, Tools, and Services October 3, 2011
Semantic eScience 2011 Scottish Healthcare Slides [Download]
ClassNotes:Semantic eScience 2011 ClassNotes5 [Download]
-
- reading: Ontology Evolution - see below under reference list for full citation
- PopSciGrid demo - on tobacco prevalence and potential data that may impact people's smoking habits - http://tw.rpi.edu/web/project/PopSciGrid
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- OWL-S editor tutorial http://owlseditor.semwebcentral.org/documents/tutorial.pdf
- OWL-S editor tutorial http://owlseditor.semwebcentral.org/documents/tutorial.pdf
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- OWL-S and WSDL references http://www.daml.org/services/owl-s/1.1/owl-s-wsdl.html
- Class 6: Class Presentation I: TUESDAY October 11, 2011 Use Cases - Part II of Assignment 2
Individual Student Use Case Homeworks - Each student should upload their presentation and use case submission
For Mushroom Project:
Here are the links recommended by Nathan Wilson:
http://eol.org
http://mushroomobserver.org
His Masters Thesis: http://collectivesource.com/taxy/thesis.html Important reference for creating an an initial macroscopic fungal ontology
Nathan's Presentation PDF:Semantic eScience 2011 Nathan's PPT [Download]
Mushroom OWL: Semantic eScience 2011 Mushroom Ontology [Download]
Use Case Document:Semantic eScience 2011 Mushroom Use Case [Download]
Readme: Semantic eScience 2011 Mushroom Readme [Download]
The new link for Materials: http://tw.rpi.edu/web/Courses/SemanticeScience/2011/FinalProjects
- Class 7: Use Case material continued and Use Case Implementation October 17, 2011
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- reading: review ontology evolution reading.
- reading: Semantic Water Quality project papers and demonstration.
Turn in one page on highlights of evolution reading and water quality reading. Focus on what aspects of ontology evolution and the water quality portal project you might reuse in your project. One page of highlights is due by Monday October 24, 2011 at 12 noon. - assignment 3: Semantic eScience 2011 Ontology Project DOC [Download]
Semantic eScience 2011 Ontology Project PDF [Download] November 14, 2011 Ontology Projects
Class Notes: Semantic eScience 2011 Class Notes for October 17th
- Class 8: October 24, 2011 Class exercise II: Foundations IV: Ontology Evolution and Knowledge Management
Jim McCuster will give the lecture - Reading assignment: Provenance papers and exemplar eScience papers. See reading class 8 below. PML, Inference Web, IAAI VSTO, Semantic eScience Web Services, Computers and Geosciences.
- Class 9: Provenance and possible external use case presentation, Semantic eScience 2011 Oct 31 Provenance [Download] Provenance for Semantic eScience October 31, 2011
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- Enabling Incremental Enhancement of Provenance Records via User Annotation [Download] - James Michaelis, presented by Deborah McGuinness
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- reading: Evaluation
- additional material: Summative versus Formative evaluation
- reading: Evaluation
-
- additional material: Example of evaluation
-
- additional material: Template example for Evaluation
- Class 10: Evaluation : Application Project Evaluation Semantic eScience 2011 Project Evaluation [Download]
Foundations V Architecture: Semantic eScience 2011 Project Evaluation [Download] Evaluation, Infrastructure and Architecture, Middleware November 7, 2011
- Class exercise III: Application Project Evaluation
-
- additional materials Orchard Irrigation and Diabetic Exchange
Optional Readings: CALO
NIMD
- additional materials Orchard Irrigation and Diabetic Exchange
- reading: none - presentations next week
- Class 11: Class Presentation II: Team Use Case Implementation
November 14, 2011 -
- Term assignment: .DOC version2011SeS_TermAssignment [Download] Use Case: Iterating and Evolving, Lessons Learned;
PDF version2011SeS_TermAssignment [Download] Use Case: Iterating and Evolving, Lessons Learned;
- Term assignment: .DOC version2011SeS_TermAssignment [Download] Use Case: Iterating and Evolving, Lessons Learned;
- reading: semantic integration
- Class 12: Foundations VI: Semantic eScience 2011 Nov 21 Lecture [Download] Discovery, Access and Semantic Integration and Foundations VII: Data Mining and Knowledge Discovery . November 21, 2011.
Extra Slides November 28, 2011
- Enabling Incremental Enhancement of Provenance Records via User Annotation [Download] - James Michaelis, presented by Deborah McGuinness
-
- reading: Provenance/ PML
- Class 13: Class Presentation III: Term assignment - Project Outcome, November 28, 2011
- Class 14: Post project evaluation: Individual evaluations of team experience, individual contributions, and extra credit for additional suggestions for ways to leverage and use provenance. December 5, 2011
Semantic eScience 2011 Final Assignment [Download]
Course Learning Objective
- Ontology Development, Merging and Validation
- Semantic Language and Tool Use and Evaluation
- Use Case Development and Elaboration
- Semantic eScience Implementation and Evaluation via Use Cases
- Semantic Application Development and Demonstration
- Group Project and Team Development, Use Case Implementation and Evaluation
- TBC
Assessment Criteria
- Via written assignments with specific percentage of grade allocation provided with each assignment
- Via oral presentations with specific percentage of grade allocation provided
- Via group presentations
- Via participation in class (not to exceed 10% of total)
- Late submission policy: first time with valid reason – no penalty, otherwise 20% of score deducted each late day
Suggested Prerequisites
- Knowledge such as that gained in a Semantic Web class (e.g., CSCI-6961)
- Knowledge such as that gained in a Web Science class (e.g., CSCI-xx)
- or permission of the instructors
Reference List
Class 1 Reading Assignment:
- [Ontologies 101] Natalya F. Noy and Deborah L. McGuinness. Ontology Development 101: A Guide to Creating Your First Ontology. Stanford Knowledge Systems Laboratory Technical Report KSL-01-05 and Stanford Medical Informatics Technical Report SMI-2001-0880, March 2001.
- Semantic Web:
-
- T Berners-Lee, J Hendler, O Lassila. The Semantic Web. Scientific American, 2001. alternative link - http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.115.9584&rep=rep1&type=pdf
- Grigoris Antoniou and Frank van Harmelen. Semantic Web Primer
- T Berners-Lee, J Hendler, O Lassila. The Semantic Web. Scientific American, 2001. alternative link - http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.115.9584&rep=rep1&type=pdf
- e-Science: Hey, T., and Trefethen, A. Cyberinfrastructure for e-Science. Science 308, 5723 (2005), 817–821.
- RDFS: RDF Vocabulary Description Language 1.0: RDF Schema. World Wide Web Consortium (W3C) Recommendation. February 10, 2004.
- [OWL Guide] Michael K. Smith, Chris Welty, and Deborah L. McGuinness. OWL Web Ontology Language Guide. World Wide Web Consortium (W3C) Recommendation. February 10, 2004.
- "Sharing of Data Leads to Progress on Alzheimer’s," By GINA KOLATA, New York Times, August 12, 2010 http://www.nytimes.com/2010/08/13/health/research/13alzheimer.html?_r=1
Optional
- Optional - OWL 2 Web Ontology Language Document Overview W3C Recommendation 27 October 2009. http://www.w3.org/TR/owl2-overview/
- Optional - Common Logic: John Sowa, Common Logic Controlled English, March, 2007. (The previous link is an updated Section 7 of (the full) Common Logic Controlled English draft.)
Class 2: Reading Assignment:
- Semantic Web for the Working Ontologist (Allemang and Henderl), first few chapters. The book is available at Amzaon.com, the RPI Library (check availability at library.rpi.edu),and an online preview is available Google Books: http://books.google.com/books?id=RnFjZTfPILcC&printsec=frontcover&cd=1&source=gbs_ViewAPI#v=onepage&q&f=false
Alternate reading -
- Alan Rector, Nick Drummond, Matthew Horridge, Jeremy Rogers, Holger Knublauch, Robert Stevens, Hai Wang, Chris Wroe. OWL Pizzas: Practical Experience of Teaching OWL-DL: Common Errors & Common Patterns. EKAW 2004. http://www.co-ode.org/resources/papers/ekaw2004.pdf
Optional reading -
- Optional: McGuinness, D.L. "Ontologies come of age" http://www.ksl.stanford.edu/people/dlm/papers/ontologies-come-of-age-abstract.html
- Optional: Demir, et al., "The BioPAX community standard for pathway data sharing" Nature Biotechnology, Volume 28, Number 9, September 2010. http://www.nature.com/nbt/journal/v28/n9/pdf/nbt.1666.pdf
- Optional: Luciano, Joanne S. and Stevens, Robert D. OWL: PAX of mind or the AX? Experiences of Using OWL in the Development of BioPAX For the workshop OWL: Experiences and Directions, Gaithersburg, MD, USA, April 1-2, 2008. http://www.webont.org/owled/2008dc/papers/owled2008dc_paper_7.pdf
Class 3: Reading Assignment:
- Use Cases:
Required:
- http://en.wikipedia.org/wiki/Use_case
- http://alistair.cockburn.us/index.php/Use_cases,_ten_years_later
Optional:
http://www.digilife.be/quickreferences/pt/functional%20requirements%20and%20use%20cases.pdf
- http://alistair.cockburn.us/index.php/Resources_for_writing_use_cases
- http://alistair.cockburn.us/Usecasesintheoryandpractice180.ppt
- http://alistair.cockburn.us/Agileusecases1dy.ppt
- http://alistair.cockburn.us/index.php/Structuring_use_cases_with_goals
- http://www.foruse.com/publications/bibliographies/usecases.htm
- http://en.wikipedia.org/wiki/Use_case
- http://www.ddj.com/dept/architect/184414701
Class 4: Reading Assignment:
- Ontology Tool Summary: Michael Denny. Ontology Tools Survey, Revisited. XML.com
- Pellet: web page: http://pellet.owldl.com
- Pellet: Evren Sirin and Bijan Parsia and Bernardo Cuenca Grau and Aditya Kalyanpur and Yarden Katz, Pellet: a practical owl-dl reasoner. Journal of Web Semantics. http://www.mindswap.org/papers/PelletJWS.pdf
- OWL-S: David Martin, Mark Burstein, Drew McDermott, Deborah L. McGuinness, Sheila McIlraith, Massimo Paolucci, Evren Sirin, Naveen Srinivasan, and Katia Sycara. Bringing Semantics to Web Services with OWL-S. World Wide Web Journal, Volume 10, Number 3, pp 243-277. Also, Stanford KSL Technical Report KSL-06-21.
- SAWSDL: Semantic Annotation of the Web Services Description Language
- Wine Agent:
-
- Eric Hsu, and Deborah L. McGuinness. KSL Wine Agent: Semantic Web Testbed Application, Proceedings of the 2003 International Workshop on Description Logics (DL2003). Rome, Italy, September 5-7, 2003. ftp://ftp.ksl.stanford.edu/pub/KSL_Reports/KSL-03-17.pdf
- James Michaelis, Li Ding, Deborah McGuinness. The TW Wine Agent A Social Semantic Web Demo. ISWC 2008 Poster and Demo Track, 2008. http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-401/iswc2008pd_submission_61.pdf
Class 5: Reading Assignment:
- [Ontology Evolution] Deborah L. McGuinness, Richard Fikes, James Rice, and Steve Wilder.
An Environment for Merging and Testing Large Ontologies. In Proceedings of the 7th International Conference on Principles of Knowledge Representation and Reasoning (KR2000), Breckenridge, Colorado, USA 12-15 April 2000
[http://www.ksl.stanford.edu/people/dlm/papers/kr00-abstract.html
optional:
- Aseem Das, Wei Wu, and Deborah L. McGuinness. ``Industrial Strength Ontology Management. Stanford Knowledge Systems Laboratory Technical Report KSL-01-09 2001. In the Proceedings of the International Semantic Web Working Symposium. Stanford, CA, July 2001. Also published in In Isabel Cruz, Stefan Decker, Jerome Euzenat, and Deborah L. McGuinness, eds. The Emerging Semantic Web. (Book available from http://www.inrialpes.fr/exmo/papers/emerging/). IOS Press, 2002. Google Book version available at http://books.google.com/books?id=spmIS-CGxUAC&printsec=frontcover&dq=the+emerging+semantic+web+book&source=bl&ots=EoQSArw8Yf&sig=Eq4PFDc1QDSBASWavuKBG4DMdn4&hl=en&ei=Y0KqTKrEF5SOjAe7gtjsDA&sa=X&oi=book_result&ct=result&resnum=3&ved=0CCQQ6AEwAg#v=onepage&q&f=false
http://www.ksl.stanford.edu/people/dlm/papers/ontologyBuilderVerticalNet-abstract.html
- OWL-S editor tutorial http://owlseditor.semwebcentral.org/documents/tutorial.pdf
- OWL-S and WSDL references http://www.daml.org/services/owl-s/1.1/owl-s-wsdl.html
- CMAP download http://cmapdownload.ihmc.us/coe/Web_InstallersV5.0/install.htm
Class 6: Reading Assignment:
Class 7: Reading Assignment:
Review Ontology Evolution reading from week 5.
Turn in one page on highlights of evolution reading and water quality reading. Focus on what aspects of ontology evolution and the water quality portal project you might reuse in your project. One page of highlights is due by Monday October 24, 2011 at 12 noon.
This is worth 5 points of the overall class score.
Water Quality papers:
Wang, P., Zheng, J., Fu, L., Patton, E., Lebo, T., Ding, L., Liu, Q., Luciano, J.S., and McGuinness, D.L. 2011. A Semantic Portal for Next Generation Monitoring Systems. In Proceedings of 10th International Semantic Web Conference (October 23-27 2011, Bonn, Germany). http://tw.rpi.edu/web/doc/iswc2011_swqp
Zheng, J., Wang, P., Patton, E., Lebo, T., Luciano, J.S., and McGuinness, D.L. 2011. A Semantically-Enabled Provenance-Aware Water Quality Portal. In Proceedings of EIM 2011 (September 28-29 2011, Santa Barbara, CA, USA).
http://tw.rpi.edu/web/doc/eim2011_swqp
Review static demo: http://inference-web.org/wiki/Semantic_Water_Quality_Portal
Class 8: Reading Assignment:
- PML -McGuinness, Ding, Pinheiro da Silva, Chang. PML 2: A Modular Explanation Interlingua. AAAI 2007 Workshop on Explanation-aware Computing, Vancouver, Can., 7/07. Stanford Tech report KSL-07-07. http://www.ksl.stanford.edu/KSL_Abstracts/KSL-07-07.html
- Inference Web - McGuinness and Pinheiro da Silva. Explaining Answers from the Semantic Web: The Inference Web Approach. Web Semantics: Science, Services and Agents on the World Wide Web Special issue: International Semantic Web Conference 2003 - Edited by K.Sycara and J.Mylopoulis. Volume 1, Issue 4. Journal published Fall, 2004 http://www.ksl.stanford.edu/KSL_Abstracts/KSL-04-03.html
- McGuinness, D.L.; Zeng, H.; Pinheiro da Silva, P.; Ding, L.; Narayanan, D.; Bhaowal, M. Investigations into Trust for Collaborative Information Repositories: A Wikipedia Case Study. The Workshop on the Models of Trust for the Web (MTW'06), Edinburgh, Scotland, May 22, 2006. 2006. http://www.ksl.stanford.edu/KSL_Abstracts/KSL-06-05.html
- [IAAI VSTO] Deborah McGuinness, Peter Fox, Luca Cinquini, Patrick West, Jose Garcia, James L. Benedict, and Don Middleton. The Virtual Solar-Terrestrial Observatory: A Deployed Semantic Web Application Case Study for Scientific Research. In the Proceedings of the Nineteenth Conference on Innovative Applications of Artificial Intelligence (IAAI-07). Vancouver, British Columbia, Canada, July 22-26, 2007.
- [Semantic eScience Web Services] Peter Fox, Luca Cinquini, Deborah L. McGuinness, Patrick West, Jose Garcia, James L. Benedict and Stephan Zednik. Semantic web services for interdisciplinary scientific data query and retrieval. In the Proceedings of the Semantic eScience Workshop co-located with the Association for the Advancement of Artificial Intelligence Conference, Vancouver, CA., July 23, 2007.
- P. Fox, D. McGuinness, L. Cinquini, P. West, J. Garcia, and J. Benedict 2008, Ontology-supported Scientific Data Frameworks: The Virtual Solar-Terrestrial Observatory Experience, Computers and Geosciences, special issue on Geoscience Knowledge Representation for Cyberinfrastructure, in press.
Class 9: Reading Assignment:
- Evaluation: Twidale, M., Randall, D. and Bentley, R. 1994, Situated evaluation for cooperative systems, Proceedings, Comp. Supp. Coop. Work 1994, Chapel Hill, NC, pp. 441-452.
- additional material: Summative versus Formative evaluation
-
- additional material: Example of evaluation
-
- additional material: Template example for Evaluation
Class 10: Reading Assignment:
Optional Readings: Alyssa Glass, Deborah L. McGuinness, Paulo Pinheiro da Silva, and Michael Wolverton. Trustable Task Processing Systems. In Roth-Berghofer, T., and Richter, M.M., editors, KI Journal, Special Issue on Explanation, Kunstliche Intelligenz, 2008.
CALO
Andrew. J. Cowell, Deborah L. McGuinness, Carrie F. Varley, and David A. Thurman. Knowledge-Worker Requirements for Next Generation Query Answering and Explanation Systems. In the Proceedings of the Workshop on Intelligent User Interfaces for Intelligence Analysis, International Conference on Intelligent User Interfaces (IUI 2006), Sydney, Australia
NIMD
Class 11: Reading Assignment:
- Integration:
- Fox, P.; McGuinness, D.L.; Raskin, R.; Sinha, K. A Volcano Erupts: Semantically Mediated Integration of Heterogeneous Volcanic and Atmospheric Data. Proceedings of the First Workshop on Cyberinfrastructure: Information Management in eScience, co-located with the ACM Conference on Information and Knowledge Management, Lisbon, Portugal, November 9, 2007. ftp://ftp.ksl.stanford.edu/pub/KSL_Reports/KSL-07-09.pdf
- Sunil Movva, Rahul Ramachandran, Xiang Li, Phani Cherukuri, Sara Graves. Noesis: A Semantic Search Engine and Resource Aggregator for Atmospheric Science. NSTC2007. http://esto.nasa.gov/conferences/nstc2007/papers/Ramachandran_Rahul_A3P4_NSTC-07-0084.pdf
- Boyan Brodaric and Florian Probst. Enabling Cross-Disciplinary e-Science by Integrating Geoscience Ontologies with DOLCE. Under Review. 2008.
- Yolanda Gil, Ewa Deelman, Mark Ellisman, Thomas Fahringer, Geoffrey Fox, Dennis Gannon, Carole Goble, Miron Livny, Luc Moreau, Jim Myers, "Examining the Challenges of Scientific Workflows," Computer , vol. 40, no. 12, pp. 24-32, December, 2007. http://www.isi.edu/~gil/papers/computer-NSFworkflows07.pdf
Class 12: Reading Assignment:
Class 13: Reading Assignment: None.
Attendance Policy
Enrolled students may miss at most one class without permission of the instructor. Once one class has been missed (with or without permission) no additional classes may be missed without permission.
Course: Semantic eScience
Date: to