Semantic eScience Publications

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Erickson, J.S., McGuinness, D.L., Bennett, K., and Sheehan, J. 2016. Addressing Scientific Rigor in Data Analytics using Semantic Workflows. In Proceedings of International Provenance and Annotation Workshop (IPAW) 2016 (June 6-9 2016, McLean, Virginia).
Leadbetter, A., Shepherd, A., Arko, R., Chandler, C., Chen, Y., Dockery, N., Ferreira, R., Fu, L., Thomas, R., West, P., and Zednik, S. 2016. Experiences of a semantics smackdown. Earth Science Informatics
Ma, X., West, P., Erickson, J.S., Zednik, S., Chen, Y., Wang, H., Zhong, H., and Fox, P. 2015. From data portal to knowledge portal: Leveraging semantic technologies to support interdisciplinary studies. In Proceedings of International Semantic Web Conference (ISWC) 2015 (October 11-15 2015, Bethlehem, PA, US).
Pinheiro, P., McGuinness, D.L., and Santos, H. 2015. Human-Aware Sensor Network Ontology: Semantic Support for Empirical Data Collection. In Proceedings of International Semantic Web Conference (ISWC) 2015 (October 11-15 2015, Bethlehem, PA, US).
Patton, E.W., Brown, E., Poegel, M., De Los Santos, H., Fasano, C.A., Bennett, K., and McGuinness, D.L. 2015. SemNExT: A Framework for Semantically Integrating and Exploring Numeric Analyses. In Proceedings of SemStats 2015 (October 11-12 2015, Bethlehem, PA).
Patton, E.W. and McGuinness, D.L. 2014. Toward Next Generation Integrative Semantic Health Information Assistants. In Proceedings of Expanding the Boundaries of Health Informatics using AI (HIAI14) (November 13-15 2014, Arlington, VA, USA), pages 39–46.
Patton, E.W. and McGuinness, D.L. 2014. Connecting Science Data Using Semantics and Information Extraction. In Proceedings of Linked Science 2014 at International Semantic Web Conference (ISWC) 2014 (October 19 2014, Riva del Garda, Trentino, Italy).
Ma, X., Zheng, J., Goldstein, J., Zednik, S., Fu, L., Duggan, B., Aulenbach, S., West, P., Tilmes, C., and Fox, P. 2014. Ontology engineering in provenance enablement for the National Climate Assessment. Environmental Modelling and Software, pages 191–205.
Ma, X., Fox, P., Tilmes, C., Jacobs, K., and Waple, A. 2014. Capturing provenance of global change information. Nature Climate Change
Fu, L. and Arko, R. 2014. Rapid Deployment of a RESTful Service for Oceanographic Research Cruises. In Proceedings of European Geosciences Union General Assembly 2014 (April 27-May 2 2014, Vienna, Austria).
McCusker, J., Solanki, K., Chang, C., Dumontier, M., Dordick, J., and McGuinness, D.L. 2014. A Nanopublication Framework for Systems Biology and Drug Repurposing. In Proceedings of CSHALS 2014 (February 26-28 2014, Boston, MA).
Ma, X., Zheng, J., Goldstein, J., Fu, L., Duggan, B., West, P., Aulenbach, S., Tilmes, C., and Fox, P. 2013. Ontology Development for Provenance Tracing in National Climate Assessment of the US Global Change Research Program. In Proceedings of AGU Fall Meeting 2013 (December 9-13 2013, San Francisco, CA).
Zheng, J., Ma, X., and Fox, P. 2013. Semantic Similarity Computation and Concept Mapping in Earth and Environmental Science. In Proceedings of AGU Fall Meeting 2013 (December 9-13 2013, San Francisco, CA).
Ma, X., Branch, B., and Wegner, K. 2013. A Justification for Semantic Training in Data Curation Frameworks Development. In Proceedings of AGU Fall Meeting 2013 (December 9-13 2013, San Francisco, CA).
Ma, X., Fox, P., Narock, T., and Wilson, B. 2013. Call for Papers: Semantic eScience special issue in Earth Science Informatics journal. Earth Science Informatics
Tilmes, C., Fox, P., Ma, X., McGuinness, D.L., Privette, A.P., Smith, A., Waple, A., Zednik, S., and Zheng, J. 2013. Provenance Representation for the National Climate Assessment in the Global Change Information System. IEEE Transactions on Geoscience and Remote Sensing
Patton, E.W., Seyed, P., and McGuinness, D.L. 2013. SemantEco: A Modular Framework for Integration of Ecological, Environmental, and Earth Sciences Data.
Ma, X. and Fox, P. 2013. Recent progress on geologic time ontologies and considerations for future works. Earth Science Informatics
Boyce, R., Horn, J., and Luciano, J.S. 2012. Dynamic Enhancement of Drug Product Labels to Support Drug Safety, Efficacy, and Effectiveness. In Proceedings of Conference on Semantics in Healthcare and Life Sciences (CSHALS) 2012 (February 22-24 2012, Boston, MA).
Ma, X. and Fox, P. 2012. Exploratory visualization of earth science data in a Semantic Web context. In Proceedings of AGU Fall Meeting 2012 (December 3-7 2012, San Francisco, CA).
Wang, H., Wilson, N., Dunn, K., and McGuinness, D.L. 2012. Semantic Vernacular System: an Observation-based, Community-powered, and Semantics-enabled Naming System for Organisms. In Proceedings of ISWC 2012 (November 11-15 2012, Boston, MA).
Wilson, N., Wang, H., and McGuinness, D.L. 2012. Scientific Names and Descriptions for Organisms on the Semantic Web. In Proceedings of 2nd International Workshop on Linked Science 2012—Tackling Big Data at ISWC 2012 (November 12 2012, Boston, MA).
McCusker, J., Lee, J., Thomas, C., and McGuinness, D.L. 2012. Public Health Surveillance Using Global Health Explorer. In Proceedings of SATBI+SWIM at ISWC 2012 (November 12 2012, Boston, MA).
Wang, P., Fu, L., Patton, E.W., McGuinness, D.L., Dein, J., and Bristol, S. 2012. Towards Semantically-enabled Exploration and Analysis of Environmental Ecosystems. In Proceedings of 8th IEEE International Conference on eScience (October 8-12 2012, Chicago, IL).
Lebo, T., Wang, P., Graves, A., and McGuinness, D.L. 2012. Towards Unified Provenance Granularities. In Proceedings of International Provenance and Annotation Workshop 2012 (June 18-22 2012, Santa Barbara, California).
Wang, P., Fu, L., Patton, E.W., McGuinness, D.L., Dein, J., and Bristol, S. 2012. SemantEco Extension for Natural Resource Managers.
Wilson, N., Dunn, K., Wang, H., and McGuinness, D.L. 2012. Application of Semantic Technology to Define Names for Fungi.
Wang, P. 2012. Semantically Enabling Next Generation Environmental Informatics Portals.
McCusker, J., Lebo, T., Chang, C., Pinheiro, P., and McGuinness, D.L. 2012. Parallel Identities for Managing Open Government Data. IEEE Intelligent Systems
McGuinness, D.L., Shaikh, A.R., Lebo, T., Ding, L., Courtney, P., McCusker, J., Moser, R., Morgan, G.D., Tatalovich, Z., Willis, G., Contractor, N., and Hesse, B.W. 2012. Towards Semantically-Enabled Next Generation Community Health Information Portals: The PopSciGrid Pilot. In Proceedings of Hawaii International Conference on System Sciences 2012 (January 4-7 2012, Grand Wailea, Maui).
Lebo, T., Erickson, J.S., Ding, L., Graves, A., Williams, G.T., DiFranzo, D., Li, X., Michaelis, J., Zheng, J., Flores, J., Shangguan, Z., McGuinness, D.L., and Hendler, J. Producing and Using Linked Open Government Data in the TWC LOGD Portal. In Linking Government Data, pages 51–72. New York, 2011. 10.1007/978-1-4614-1767-5_3
2011. Linking Government Data.
Wang, P., Zheng, J., Fu, L., Patton, E.W., Lebo, T., Ding, L., Luciano, J.S., and McGuinness, D.L. 2011. Next Generation Environmental Informatics as exemplified by the Tetherless World Semantic Water Quality Portal. In Proceedings of AGU Fall Meeting 2011 (December 5-9 2011).
Patton, E.W., Wang, P., Zheng, J., Fu, L., Lebo, T., Ding, L., Liu, Q., Luciano, J.S., and McGuinness, D.L. 2011. Assessing Health Effects of Water Pollution Using a Semantic Water Quality Portal. In Proceedings of 10th International Semantic Web Conference (October 23-27 2011, Bonn, Germany).
McCusker, J., Lebo, T., Ding, L., Chang, C., Pinheiro, P., and McGuinness, D.L. 2011. Where did you hear that? Information and the Sources They Come From. In Proceedings of International Workshop on Linked Science 2011 (October 14 2011, Bonn, Germany).
Wang, P., Zheng, J., Fu, L., Patton, E.W., Lebo, T., Ding, L., Liu, Q., Luciano, J.S., and McGuinness, D.L. 2011. A Semantic Portal for Next Generation Monitoring Systems. In Proceedings of 10th International Semantic Web Conference (October 23-27 2011, Bonn, Germany).
Ma, X. 2011. A SKOS-based multilingual thesaurus of geological time scale for interoperability of online geological maps. Computers & Geosciences, pages 1602–1615.
Zheng, J., Wang, P., Patton, E.W., Lebo, T., Luciano, J.S., and McGuinness, D.L. 2011. A Semantically-Enabled Provenance-Aware Water Quality Portal. In Proceedings of the Environmental Information Management Conference 2011 (September 28-29 2011, Santa Barbara, CA, USA).
Fox, P. 2011. The rise of informatics as a research domain.
Wang, P., Zheng, J., Fu, L., Patton, E.W., Lebo, T., Ding, L., Liu, Q., Luciano, J.S., and McGuinness, D.L. 2011. TWC-SWQP: A Semantic Portal for Next Generation Environmental Monitoring (Technical Report).
McGuinness, D.L., Shaikh, A.R., Moser, R., Hesse, B.W., Morgan, G.D., Jacobs, M., Hunt, Y., Tatalovich, Z., Willis, G., Blake, K., Courtney, P., Finney, L., Sanders, A., Ding, L., Lebo, T., McCusker, J., Contractor, N., Huang, Y., and Devlin, H. 2011. A Semantically-enabled Community Health Portal for Cancer Prevention and Control. In Proceedings of Web Science Conference 2011 (June 15-17 2011, Koblenz, Germany).
Ding, L., Michaelis, J., McCusker, J., and McGuinness, D.L. 2011. Linked provenance data: A semantic Web-based approach to interoperable workflow traces. Future Generation Computer Systems, pages 797–805.
McCusker, J., Luciano, J.S., and McGuinness, D.L. 2011. Towards an Ontology for Conceptual Modeling. In Proceedings of International Conference on Biomedical Ontology (July 26-30 2011, Buffalo, NY, US).
Fox, P. and Hendler, J. 2011. Changing the Equation on Scientific Data Visualization. Science Magazine, pages 705–708.
Zednik, S., Fox, P., and McGuinness, D.L. System Transparency, or How I Learned to Worry about Meaning and Love Provenance!. In Proceedings of International Provenance and Annotation Workshop 2010 (June 15-16 2010, Hefner Alumni House, Rensselaer Polytechnic Institute, Troy, NY, US), pages 165–173. 2010.
Benedict, J., McGuinness, D.L., and Fox, P. 2010. A Reusable Semantic Virtual Observatory Platform. In Proceedings of AGU Fall Meeting 2008 (December 15-19 2008, San Francisco, CA).
West, P., Michaelis, J., Fox, P., Zednik, S., and McGuinness, D.L. 2010. Presenting Provenance Based on User Roles: Experiences with a Solar Physics Data Ingest System. In Proceedings of AGU Fall Meeting 2010 (December 13-17 2010, San Francisco, CA).
Rozell, E., Maffei, A., Beaulieu, S., and Fox, P. 2010. A Framework for Integrating Oceanographic Data Repositories. In Proceedings of AGU Fall Meeting 2010 (December 13-17 2010, San Francisco, CA).
Rozell, E., West, P., and Fox, P. 2010. Experiences Integrating Temporal Metadata in a Domain Ontology. In Proceedings of OWLED 2010 (June 21-22 2010).
McCusker, J. and McGuinness, D.L. 2010. Provenance of High Throughput Biomedical Experiments. In Proceedings of International Provenance and Annotation Workshop 2010 (June 15-16 2010, Hefner Alumni House, Rensselaer Polytechnic Institute, Troy, NY, US).
Michaelis, J., Ding, L., Shangguan, Z., Zednik, S., Huang, R., Pinheiro, P., Rio, N., and McGuinness, D.L. 2009. Towards Usable and Interoperable Workflow Provenance: Empirical Case Studies Using PML. In Proceedings of First International Workshop on the role of Semantic Web in Provenance Management (October 25 2009).
Zednik, S., Fox, P., McGuinness, D.L., Pinheiro, P., and Chang, C. 2009. Semantic Provenance for Science Data Products - Application to Image Data Processing. In Proceedings of First International Workshop on the role of Semantic Web in Provenance Management (October 25 2009).
Fox, P., McGuinness, D.L., Cinquini, L., West, P., Garcia, J., Benedict, J., and Middleton, D. 2009. Ontology-supported Scientific Data Frameworks: The Virtual Solar-Terrestrial Observatory Experience. Computers & Geosciences, pages 724–738.
McGuinness, D.L., Fox, P., Pinheiro, P., Zednik, S., Rio, N., Ding, L., West, P., and Chang, C. 2008. Annotating and embedding provenance in science data repositories to enable next generation science applications. In Proceedings of AGU Fall Meeting 2008 (December 15-19 2008, San Francisco, CA).
Fox, P. and McGuinness, D.L. 2008. TWC Semantic Web Methodology.
Fox, P., McGuinness, D.L., Garcia, J., Zednik, S., and Ding, L. 2008. Semantic Provenance for Image Data Processing. In Proceedings of Geoinformatics 2008 (June 11-13 2008).
McGuinness, D.L., Fox, P., Sinha, K., Raskin, R., Rezgui, A., and West, P. 2008. Semantic Data Integration and Registration: Application to Heterogeneous Atmosphere and Volcanic Data Sources. In Proceedings of ISWC 2008 (October 26-30 2008, Karlsruhe, Germany).
McGuinness, D.L., Fox, P., Cinquini, L., West, P., Garcia, J., Benedict, J., and Middleton, D. 2007. A Deployed Semantically-Enabled Interdisciplinary Virtual Observatory. In Proceedings of Conference on Artificial Intelligence 2007 (July 22-26 2007, Vancouver, British Columbia).
Fox, P., Cinquini, L., McGuinness, D.L., West, P., Garcia, J., Benedict, J., and Zednik, S. 2007. Semantic Web Services for Interdisciplinary Scientific Data Query and Retrieval. In Proceedings of AAAI Workshop on Semantic e-Science 2007 at Conference on Artificial Intelligence 2007 (July 23 2007July 23 2007, Vancouver, Canada).
McGuinness, D.L., Fox, P., Cinquini, L., West, P., Garcia, J., Benedict, J., and Middleton, D. 2007. The Virtual Solar-Terrestrial Observatory: A Deployed Semantic Web Application Case Study for Scientific Research. In Proceedings of Innovative Applications of Artificial Intelligence Conference 2007 (July 22 2007-July 26 2011, Vancouver, British Columbia).
McGuinness, D.L., Fox, P., Cinquini, L., West, P., Benedict, J., and Garcia, J. 2007. Current and future uses of OWL for Earth and Space science data frameworks: successes and limitations. In Proceedings of OWLED 2007 (June 6-7 2007).
McGuinness, D.L., Fox, P., Cinquini, L., Darnell, J., West, P., Benedict, J., Garcia, J., and Middleton, D. 2006. Ontology-Enabled Virtual Observatories: Semantic Integration in Practice. In Proceedings of ISWC 2006 (November 5-9 2006, Athens, GA, US).