Ontology Engineering Environments

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Lead Professor: Deborah L. McGuinness

Concepts:Semantic Web

Description:

Ontology Engineering Environments
DataONE Semantics LogoDataONE Semantics (D1-Semantics)
Principal Investigator: Deborah L. McGuinness
Co Investigator: Matt Jones, Ben Leinfelder, Xixi Luo, and Mark Schildhauer
Description: Semantic search on measurements will enable precise data discovery by helping users identify relevant content from the massive and heterogeneous catalog in DataONE, thereby improving efficiency and opportunities for researchers and other data consumers.
S2S Project LogoSemantically Enabled Facetd Browser (S2S)
Principal Investigator: Peter Fox
Co Investigator: Stephan Zednik
Description: S2S is a user interface framework that leverages the machine-readable semantics of data, services, and user interface components, or "widgets". S2S automates various tasks in UI development for search interfaces.
SEMMDD LogoSemantically Enabled Modeling of Major Depressive Disorder (SEMMDD)
Principal Investigator: Joanne S. Luciano
Description: In this project, we study the effects of how different antidepressant treatments, including non-pharmacological treatments, affect the underlying brain regions, clinical symptoms, and behaviors. We use mathematical modeling and computer simulation to combine clinical research with neuroscience research.
Publications:
McCusker, J., Rashid, S.M., Liang, J., Liu, Y., Chastain, K., Pinheiro, P., Stingone, J.A., and McGuinness, D.L. 2017. Broad, Interdisciplinary Science In Tela: An Exposure and Child Health Ontology. In Proceedings of 9th International ACM Web Science Conference 2017 (June 26-28 2017, Troy, NY, USA).
Ma, X., Zheng, J., Goldstein, J., Zednik, S., Fu, L., Duggan, B., Aulenbach, S., West, P., Tilmes, C., and Fox, P. 2014. Ontology engineering in provenance enablement for the National Climate Assessment. Environmental Modelling and Software, pages 191–205.
Ma, X., Fox, P., Tilmes, C., Jacobs, K., and Waple, A. 2014. Capturing provenance of global change information. Nature Climate Change
Ma, X., Zheng, J., Goldstein, J., Fu, L., Duggan, B., West, P., Aulenbach, S., Tilmes, C., and Fox, P. 2013. Ontology Development for Provenance Tracing in National Climate Assessment of the US Global Change Research Program. In Proceedings of AGU Fall Meeting 2013 (December 9-13 2013, San Francisco, CA).
Seyed, P., Chastain, K., Ashby, B.E., Liu, Y., Lebo, T., Patton, E.W., and McGuinness, D.L. 2013. SemantEco Annotator. In Proceedings of ISWC 2013 (October 21-25 2013, Sydney, Australia).
Ma, X., Fox, P., Narock, T., and Wilson, B. 2013. Call for Papers: Semantic eScience special issue in Earth Science Informatics journal. Earth Science Informatics
Patton, E.W., Seyed, P., Wang, P., Fu, L., Dein, J., Bristol, S., and McGuinness, D.L. 2013. SemantEco: A semantically powered modular architecture for integrating distributed environmental and ecological data. Future Generation Computer Systems
Tilmes, C., Fox, P., Ma, X., McGuinness, D.L., Privette, A.P., Smith, A., Waple, A., Zednik, S., and Zheng, J. 2013. Provenance Representation for the National Climate Assessment in the Global Change Information System. IEEE Transactions on Geoscience and Remote Sensing
Ma, X. and Fox, P. 2013. Recent progress on geologic time ontologies and considerations for future works. Earth Science Informatics
Tao, J. 2010. Adding Integrity Constraints to the Semantic Web for Instance Data Evaluation. In Proceedings of ISWC 2010 (November 7-11 2010, Shanghai, China).
Tao, J., Sirin, E., Bao, J., and McGuinness, D.L. 2010. Integrity Constraints in OWL. In Proceedings of AAAI 2010 (July 11-15 2010).
Tao, J., Sirin, E., Bao, J., and McGuinness, D.L. 2010. Integrity Constraints in OWL.
Tao, J., Sirin, E., Bao, J., and McGuinness, D.L. 2010. Extending OWL with Integrity Constraints. In Proceedings of Description Logics Workshop 2010 (May 4-7 2010, Waterloo, Canada).
Tao, J., Tao, J., Sirin, E., and Sirin, E. 20092009. Integrity Constraints in OWL. In Proceedings of ISWC 2009, International Semantic Web Conference (October 25-29 2009, Chantilly, VA, US).
Sirin, E. and Tao, J. 2009. Towards Integrity Constraints in OWL. In Proceedings of OWLED 2009 (October 23-24 2009, Westfields Conference Center, Washington, D.C., US).
Tao, J., Ding, L., Bao, J., and McGuinness, D.L. 2009. Instance Data Evaluation for Semantic Web-Based Knowledge Management Systems. In Proceedings of 42nd Hawaii International Conference on Systems Science (January 5-8 2009).
Tao, J., Ding, L., Bao, J., and McGuinness, D.L. 2008. Characterizing and Detecting Integrity Issues in OWL Instance Data. In Proceedings of OWLED EU 2008 (October 26-27 2008, Karlsruhe, Germany).
Ding, L., Tao, J., and McGuinness, D.L. 2008. An Initial Investigation on Evaluating Semantic Web Instance Data. In Proceedings of WWW 2008 (April 21-25 2008, Beijing, China), pages 1179–1180.
Ding, L., Tao, J., and McGuinness, D.L. 2008. OWL Instance Data Evaluation. In Proceedings of OWLED DC 2008 (April 1-2 2008, Washington, D.C.).
Bao, J. and Honavar, V. 2005. Collaborative Package-based Ontology Building and Usage. In Proceedings of IEEE Workshop on Knowledge Acquisition from Distributed, Autonomous, Semantically Heterogeneous Data and Knowledge Sources 2005 (November 27 2005).
Caragea, D., Zhang, J., Bao, J., Pathak, J., and Honavar, V. 2005. Algorithms and Software for Collaborative Discovery from Autonomous, Semantically Heterogeneous, Distributed Information Sources. In Proceedings of Discovery Science Conference 2005 (October 8-11 2005, Singapore).
Bao, J. and Honavar, V. 2004. Collaborative ontology building with wikiOnt - a multi-agent based ontology building environment. In Proceedings of Evaluation of Ontology-based Tools 2004 (November 8 2004).
McGuinness, D.L. 2000. Conceptual Modeling for Distributed Ontology Environments. In Proceedings of International Conference on Conceptual Structures 2000 (August 14-18 2000, Darmstadt, Germany).

Presentations:
Prabhu, A., Zednik, S., Fox, P., & Ramachandran, R. (December 12, 2016). A rules-based service for suggesting visualizations to analyze Earth Science phenomena. In: AGU Fall Meeting 2016
West, P., Zednik, S., Fu, L., Ma, X., & Fox, P. (December 15, 2015). Determining Fitness-For-Use of Ontologies through Change Management, Versioning and Publication Best Practices. In: AGU Fall meeting 2015
Pinheiro, P., McGuinness, D., & Santos, H. (October 12, 2015). Human-Aware Sensor Network Ontology: Semantic Support for Empirical Data Collection. In: International Semantic Web Conference (ISWC) 2015
Luo, X. (October 3, 2014). DataONE AHM summary - Fall2014. In: DataONE All Hands Meeting Fall 2014
Luo, X., Pinheiro, P., Chastain, K., & Liu, Y. (October 1, 2014). Show and Tell-D1 AHM Semantics WG-Fall2014. In: DataONE All Hands Meeting Fall 2014
Pinheiro, P. (July 15, 2014). HASNetO: A Human-Aware Sensor Network Ontology. In: TW E-Science Group Meeting
Pinheiro, P., & McGuinness, D. (June 9, 2014). Extended Semantic Infrastructure for Jefferson Project. In: Jefferson Project Team Meeting - June 2014
Luo, X., Schildhauer, M., & McGuinness, D. (May 15, 2014). DataONE AHM summary-MAY2014.
Luo, X., McGuinness, D., & Schildhauer, M. (May 13, 2014). Lighting Talk-D1 AHM Semantics-MAY2014. In: DataONE All Hands Meeting Summer 2014
Ma, X., Fox, P., Tilmes, C., Beaulieu, S., West, P., Fu, L., & Zheng, J. (January 8, 2014). Deliberations of Reusing the PROV Ontology for Provenance Capture in Earth and Environmental Sciences. In: ESIP Winter Meeting 2014
Seyed, P., Chastain, K., Ashby, B., Liu, Y., Lebo, T., Patton, E., & McGuinness, D. (December 9, 2013). Linking Disparate Datasets of the Earth Sciences with the SemantEco Annotator. In: AGU Fall Meeting 2013
Seyed, P., Patton, E., & McGuinness, D. (November 1, 2013). Hierarchical Search in SemantEco Supporting Varied Ontology Design Patterns. In: Taxonomic Databases Working Group Conference
Seyed, P., Chastain, K., Ashby, B., Liu, Y., Lebo, T., Patton, E., & McGuinness, D. (October 30, 2013). SemantEco Annotator for Linked Data Generation and Generalized Semantic Mapping. In: Taxonomic Databases Working Group Conference
Seyed, P., Chastain, K., Ashby, B., Liu, Y., Lebo, T., Patton, E., & McGuinness, D. (October 21, 2013). SemantEco Annotator Poster. In: ISWC 2013
Fox, P. (July 17, 2013). An Open-World Iterative Methodology for the Development and Evaluation of Semantically-Enabled Applications. In: AAAI/IAAI 2013
Ma, X., Zheng, J., Goldstein, J., Fu, L., Aulenbach, S., Tilmes, C., & Fox, P. (July 11, 2013). A use case-driven iterative method for building a provenance-aware GCIS ontology.
Tilmes, C., Duggan, B., Aulenbach, S., Goldstein, J., Buddenberg, A., Fox, P., Ma, X., Zheng, J., & Fu, L. (July 11, 2013). Global Change Information System. In: ESIP Federation Summer Meeting 2013
Ma, X., Zheng, J., Goldstein, J., Aulenbach, S., Tilmes, C., & Fox, P. (July 9, 2013). Ontology engineering for provenance enablement in the third National Climate Assessment. In: ESIP Federation Summer Meeting 2013
Tilmes, C. (January 8, 2013). Global Change Information System. In: ESIP Federation Winter 2013 Meeting
McGuinness, D., McGuinness, D., & McGuinness, D. (October 24, 2011October 24, 2011October 24, 2011). Ontologies Come Of Age: The Next GenerationOntologies Come of Age: The Next Generation. In: OCAS: Ontologies come of Age in the Semeantic Web at 10th International Semantic Web Conference
Fox, P. (September 28, 2011). Semantic Data Frameworks Come of Age. In: Astroinformatics 2011