OBO Relation Ontology in OWL

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Contents 1 Overview 2 Domain Concept Coverage 3 Concept Modeling 3.1 inheritance 3.2 transitive relation 3.3 inverse relation 4 Semantic Web Language Feature Usage 4.1 Usage of OWL Constructs 4.2 Meta Usage of Semantic Web Terms 4.2.1 classes populated in this ontology (POP-C) 4.2.2 properties populated in this ontology (POP-P) 4.2.3 classes defined in this ontology (DEF-C) 4.2.4 properties defined in this ontology (DEF-P) 4.3 Class Hierarchy (Frame-ish view) 4.4 Property Hierarchy

Overview

relations used by OBO Foundry ontologies.

documentation: http://www.obofoundry.org/ro/

Domain Concept Coverage

spatial

• ro:adjacent_to
• ro:contained_in
• ro:contains
• ro:located_in
• ro:location_of

event

• ro:derived_into
• ro:derives_from
• ro:preceded_by
• ro:precedes
• ro:transformation_of

relation

• ro:has_part
  • ro:has_integral_part
  • ro:has_proper_part
• ro:has_participant
  • ro:has_agent
• ro:part_of
  • ro:integral_part_of
  • ro:proper_part_of
• ro:participates_in
  • ro:agent_in

Concept Modeling

inheritance

• property hierarchy

transitive relation

  <owl:TransitiveProperty rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part">
    <rdfs:label xml:lang="en">has_part</rdfs:label>
    <owl:inverseOf rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
    <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
    <oboInOwl:hasAlternativeId>OBO_REL:0000003</oboInOwl:hasAlternativeId>
  </owl:TransitiveProperty>

inverse relation

  <owl:TransitiveProperty rdf:about="http://www.obofoundry.org/ro/ro.owl#has_part">
    <rdfs:label xml:lang="en">has_part</rdfs:label>
    <owl:inverseOf rdf:resource="http://www.obofoundry.org/ro/ro.owl#part_of"/>
    <oboInOwl:hasOBONamespace>relationship</oboInOwl:hasOBONamespace>
    <oboInOwl:hasAlternativeId>OBO_REL:0000003</oboInOwl:hasAlternativeId>
  </owl:TransitiveProperty>

Semantic Web Language Feature Usage

Below are some general information about this ontology. The analytical results are generated based on Semantic Web Ontology Analysis Techniques.

RDF

{{#vardefine:ns| }}{{#vardefine:p|number of triples }}{{#vardefine:v|268 }}

OWL

{{#vardefine:ns| }}{{#vardefine:p|OWL Species }}{{#vardefine:v|Lite }} {{#vardefine:ns| }}{{#vardefine:p|DL Expressivity }}{{#vardefine:v|ALR+HI }}

AL - Attribute Logic: Conjunction, Universal Value Restriction, Limited Existential Quantification 
H - Role Hierarchy 
R+ - Role Transitivit
I - Role Inverse

Usage of OWL Constructs

OWL Validation (execute)

• Inverse
• Transitive
• Individuals

Meta Usage of Semantic Web Terms

(see Semantic Web Ontology Analysis Techniques#Meta Usage)

classes populated in this ontology (POP-C)

xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"

• Category:oboInOwl:DbXref
• Category:oboInOwl:Definition
• Category:oboInOwl:Synonym
• Category:owl:AnnotationProperty
• Category:owl:ObjectProperty
• Category:owl:Ontology
• Category:owl:Restriction
• Category:owl:TransitiveProperty

properties populated in this ontology (POP-P)

• Property:oboInOwl:hasAlternativeId
• Property:oboInOwl:hasDbXref
• Property:oboInOwl:hasDefaultNamespace
• Property:oboInOwl:hasDefinition
• Property:oboInOwl:hasExactSynonym
• Property:oboInOwl:hasOBONamespace
• Property:oboInOwl:hasURI
• Property:oboInOwl:savedBy
• Property:rdf:type
• Property:rdfs:comment
• Property:rdfs:label
• Property:rdfs:subPropertyOf
• Property:owl:inverseOf

classes defined in this ontology (DEF-C)

note: this ontology redefines classes from other ontology, such as oboInOwl:Definition.

properties defined in this ontology (DEF-P)

1. Property:ro:adjacent_to
2. Property:ro:agent_in
3. Property:ro:contained_in
4. Property:ro:contains
5. Property:ro:derived_into
6. Property:ro:derives_from
7. Property:ro:has_agent
8. Property:ro:has_improper_part (obsoleted)
9. Property:ro:has_integral_part
10. Property:ro:has_part
11. Property:ro:has_participant
12. Property:ro:has_proper_part
13. Property:ro:improper_part_of (obsoleted)
14. Property:ro:integral_part_of
15. Property:ro:located_in
16. Property:ro:location_of
17. Property:ro:part_of
18. Property:ro:participates_in
19. Property:ro:preceded_by
20. Property:ro:precedes
21. Property:ro:proper_part_of
22. Property:ro:relationship (obsoleted)
23. Property:ro:transformation_of
24. Property:ro:transformed_into(obsoleted)

note: this ontology redefines properties from other ontology, such as oboInOwl:hasURI.

Class Hierarchy (Frame-ish view)

Property Hierarchy

• ro:adjacent_to
• ro:contained_in
• ro:contains
• ro:derived_into
• ro:derives_from
• ro:has_part
  • ro:has_improper_part (obsoleted)
  • ro:has_integral_part
  • ro:has_proper_part
• ro:has_participant
  • ro:has_agent
• ro:located_in
• ro:location_of
• oboInOwl#ObsoleteProperty
  • ro:has_improper_part (obsoleted)
  • ro:improper_part_of (obsoleted)
  • ro:relationship (obsoleted)
  • ro:transformed_into (obsoleted)
• ro:part_of
  • ro:improper_part_of (obsoleted)
  • ro:integral_part_of
  • ro:proper_part_of
• ro:participates_in
  • ro:agent_in
• ro:preceded_by
• ro:precedes
• ro:transformation_of