MyGrid
From Semantic Portal Wiki
An annotation-based process-oriented provenance system for Biology applications.
Contents |
Simmhan2005survey
Notes
mygrid: [87],
in silico experiments: [46], [73]
xscufl workflow language using taverna workflow environment: [74]
infer provenence from process-oriented workflow log: [46]
user need to annotate
users can provide domain-specific terms: [6,46]
xml, html, and rdf used to represent syntactic and semantic provenance metadata using the annotation scheme: [61]
granularity by LSID: [74] (including experiments, workflow specs, services, and data products: [61])
mIR = myGrid Information Repository: [74]
semantically-enhanced provenance logs [73]
LSID visualizer [46]
haystack [74]
trigger rerun of another workflow whose input data params it may have updated: [87].
References
[6] M. Greenwood, C. Goble, R. Stevens, J. Zhao, M. Addis, D. Marvin, L. Moreau, and T. Oinn, "Provenance of e-Science Experiments - experience from Bioinformatics," in Proceedings of the UK OST e-Science second All Hands Meeting, 2003. greenwood2003provenance
[46] J. Zhao, C. Wroe, C. A. Goble, R. Stevens, D. Quan, and R. M. Greenwood, "Using Semantic Web Technologies for Representing E-science Provenance," in International Semantic Web Conference, 2004, pp. 92-106. zhao2004using
[61] C. Goble, "Position Statement: Musings on Provenance, Workflow and (Semantic Web) Annotations for Bioinformatics," in Workshop on Data Derivation and Provenance, Chicago, 2002. goble2002position
[73] J. Zhao, C. Goble, M. Greenwood, C. Wroe, and R. Stevens, "Annotating, linking and browsing provenance logs for e-Science," in ISWC Workshop on Retrieval of Scientific Data, Florida, 2003. zhao2003annotating
[74] J. Zhao, C. A. Goble, R. Stevens, and S. Bechhofer, "Semantically Linking and Browsing Provenance Logs for E-science," in ICSNW, 2004, pp. 158-176. zhao2004semantically
[87] R. D. Stevens, A. J. Robinson, and C. A. Goble, "myGrid: personalised bioinformatics on the information grid," in Bioinformatics, vol. 19, 2003, pp. 302i-304. stevens2003mygrid
Provenance Challenge
http://twiki.ipaw.info/bin/view/Challenge/MyGrid
- Jun Zhao, Carole Goble and Robert Stevens. An Identity Crisis in The Life Sciences.In International Provnenace and Annotation Workshops, May 2006 zhao2006identity
- Jun Zhao, Chris Wroe, Carole Goble, Robert Stevens, Dennis Quan and Mark Greenwood. Using Semantic Web Technologies for Representing e-Science Provenance. In the Third International Semantic Web Conference, Hiroshima, Japan, November 7 - 11, 2004 zhao2004using
